Last updated: 2024-04-16

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Rmd 9f85745 alexmccreight 2024-04-16 move folder

1.4:1 Theta to Beta Ratio

Model CS_FDR CS_Recall CS_Size Coverage L nonsparse_coverage theta_beta_ratio
SuSiE 0.123 0.126 8.456 0.869 10 0.01 1.4
SuSiE-Attainable 0.095 0.133 6.849 0.896 10 0.01 1.4
SuSiE-ASH 0.127 0.121 8.250 0.865 10 0.01 1.4
SuSiE 0.137 0.198 11.149 0.842 20 0.01 1.4
SuSiE-Attainable 0.157 0.156 6.138 0.837 20 0.01 1.4
SuSiE-ASH 0.117 0.117 10.519 0.858 20 0.01 1.4
SuSiE 0.076 0.162 13.516 0.915 30 0.01 1.4
SuSiE-Attainable 0.091 0.121 5.757 0.904 30 0.01 1.4
SuSiE-ASH 0.089 0.085 14.411 0.904 30 0.01 1.4
SuSiE 0.069 0.046 22.428 0.871 10 0.05 1.4
SuSiE-Attainable 0.094 0.026 9.180 0.854 10 0.05 1.4
SuSiE-ASH 0.094 0.033 20.391 0.849 10 0.05 1.4
SuSiE 0.118 0.043 15.620 0.810 20 0.05 1.4
SuSiE-Attainable 0.190 0.025 7.997 0.759 20 0.05 1.4
SuSiE-ASH 0.108 0.039 15.596 0.819 20 0.05 1.4
SuSiE 0.091 0.030 12.145 0.891 30 0.05 1.4
SuSiE-Attainable 0.111 0.022 7.258 0.873 30 0.05 1.4
SuSiE-ASH 0.081 0.023 11.560 0.904 30 0.05 1.4

3:1 Theta to Beta Ratio

Model CS_FDR CS_Recall CS_Size Coverage L nonsparse_coverage theta_beta_ratio
SuSiE 0.144 0.130 9.665 0.851 10 0.01 3
SuSiE-Attainable 0.150 0.127 6.725 0.850 10 0.01 3
SuSiE-ASH 0.146 0.121 10.521 0.849 10 0.01 3
SuSiE 0.102 0.226 11.958 0.890 20 0.01 3
SuSiE-Attainable 0.091 0.202 6.692 0.902 20 0.01 3
SuSiE-ASH 0.080 0.180 12.193 0.913 20 0.01 3
SuSiE 0.217 0.152 18.494 0.764 30 0.01 3
SuSiE-Attainable 0.200 0.105 5.213 0.775 30 0.01 3
SuSiE-ASH 0.217 0.152 19.192 0.764 30 0.01 3
SuSiE 0.133 0.039 16.400 0.800 10 0.05 3
SuSiE-Attainable 0.168 0.032 9.685 0.754 10 0.05 3
SuSiE-ASH 0.147 0.037 15.662 0.782 10 0.05 3
SuSiE 0.154 0.041 12.852 0.771 20 0.05 3
SuSiE-Attainable 0.184 0.030 8.996 0.766 20 0.05 3
SuSiE-ASH 0.168 0.032 13.984 0.760 20 0.05 3
SuSiE 0.144 0.033 13.730 0.786 30 0.05 3
SuSiE-Attainable 0.256 0.018 6.864 0.725 30 0.05 3
SuSiE-ASH 0.117 0.027 11.986 0.850 30 0.05 3

5:1 Theta to Beta Ratio

Model CS_FDR CS_Recall CS_Size Coverage L nonsparse_coverage theta_beta_ratio
SuSiE 0.163 0.124 10.992 0.824 10 0.01 5
SuSiE-Attainable 0.153 0.123 6.790 0.829 10 0.01 5
SuSiE-ASH 0.187 0.115 11.095 0.799 10 0.01 5
SuSiE 0.099 0.220 12.555 0.897 20 0.01 5
SuSiE-Attainable 0.103 0.182 7.813 0.894 20 0.01 5
SuSiE-ASH 0.092 0.158 12.139 0.903 20 0.01 5
SuSiE 0.137 0.185 12.182 0.855 30 0.01 5
SuSiE-Attainable 0.159 0.147 6.476 0.832 30 0.01 5
SuSiE-ASH 0.139 0.148 12.037 0.851 30 0.01 5
SuSiE 0.102 0.041 13.920 0.856 10 0.05 5
SuSiE-Attainable 0.145 0.025 7.719 0.830 10 0.05 5
SuSiE-ASH 0.093 0.038 14.280 0.849 10 0.05 5
SuSiE 0.123 0.048 15.740 0.810 20 0.05 5
SuSiE-Attainable 0.167 0.028 8.116 0.786 20 0.05 5
SuSiE-ASH 0.138 0.038 16.158 0.778 20 0.05 5
SuSiE 0.139 0.041 15.056 0.778 30 0.05 5
SuSiE-Attainable 0.190 0.026 7.576 0.752 30 0.05 5
SuSiE-ASH 0.152 0.034 13.380 0.765 30 0.05 5 

sessionInfo()
R version 4.3.1 (2023-06-16)
Platform: aarch64-apple-darwin20 (64-bit)
Running under: macOS Sonoma 14.1

Matrix products: default
BLAS:   /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/lib/libRblas.0.dylib 
LAPACK: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/lib/libRlapack.dylib;  LAPACK version 3.11.0

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

time zone: America/New_York
tzcode source: internal

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] lubridate_1.9.3 forcats_1.0.0   stringr_1.5.1   dplyr_1.1.4    
 [5] purrr_1.0.2     readr_2.1.5     tidyr_1.3.1     tibble_3.2.1   
 [9] ggplot2_3.5.0   tidyverse_2.0.0

loaded via a namespace (and not attached):
 [1] sass_0.4.9        utf8_1.2.4        generics_0.1.3    stringi_1.8.3    
 [5] hms_1.1.3         digest_0.6.35     magrittr_2.0.3    timechange_0.3.0 
 [9] evaluate_0.23     grid_4.3.1        fastmap_1.1.1     rprojroot_2.0.4  
[13] workflowr_1.7.1   jsonlite_1.8.8    whisker_0.4.1     promises_1.3.0   
[17] fansi_1.0.6       scales_1.3.0      jquerylib_0.1.4   cli_3.6.2        
[21] rlang_1.1.3       munsell_0.5.1     withr_3.0.0       cachem_1.0.8     
[25] yaml_2.3.8        tools_4.3.1       tzdb_0.4.0        colorspace_2.1-0 
[29] httpuv_1.6.15     vctrs_0.6.5       R6_2.5.1          lifecycle_1.0.4  
[33] git2r_0.33.0      fs_1.6.3          pkgconfig_2.0.3   pillar_1.9.0     
[37] bslib_0.7.0       later_1.3.2       gtable_0.3.4      glue_1.7.0       
[41] Rcpp_1.0.12       xfun_0.43         tidyselect_1.2.1  rstudioapi_0.16.0
[45] knitr_1.45        htmltools_0.5.8.1 rmarkdown_2.26    compiler_4.3.1